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The FBI investigates the disappearance of Eric Miller, a middle school student who disappeared during a bathroom break. He was only away for about ten minutes, so either he or his suspected kidnappers may have known what would happen. The investigators learn that Eric had low self-esteem and saw himself as part of the loser crowd at school. When his friend tells Agent Johnson about a bullying incident and they also locate a surveillance video from a local arcade showing an older boy pushing him, they realize they may have something other than a kidnapping.

This case, a missing 15-year-old school boy, focuses on the emotional anguish of the parents as the team does its best to find him.

A man that has appeared a number of times asking for help to find his missing son, goes missing. Then when the team finds that he found a break in the case, they go after him, and maybe his son too...

Jack's squad must determine the best course of action when Samantha is shot and possibly critically injured in a hostage situation. After the ransom drop for a woman who has disappeared goes dreadfully wrong, Samantha becomes trapped in a bookstore by the kidnapper, Barry Mashburn, who has discovered that she is an FBI agent.

Jack and his team search for an office worker, Sydney Harrison, who disappeared from her building. Within hours of Sydney going missing, her employers receive a ransom note via e-mail demanding $50,000.

A suburban mother goes missing in broad daylight, similar to another case from years ago where Jack failed to save the victim. Graham Spalding copycats the case only to taunt Jack and seek revenge.

A father and his young daughter go missing on the way to school. While initially suspecting that the father has been having an affair, when the team digs further into his background, they discover nothing is what it seems with this man. His true identity and the reason behind the disappearance is not revealed until they locate his daughter.

The mayor of a New York state countryside small town where people lock cars nor houses had to call the FBI for the disappearance of a teenage school girl last seen at the school bus stop. While the team learns about the close community, the victim's confident friend also goes missing. The MO fits similar cases in other inconspicuous places roughly on a line, so it's feared the work of a traveling serial pedophile.

Martin's aunt, a nurse battling cancer, goes to visit a friend but never makes it there. Martin soon learns that his aunt had been assisting terminally ill patients in their suicides. Meanwhile, Jack must deal with his father's medical crisis.

Andy Deaver, a student at the Spaulding Academy boarding school, goes missing after telling his mother he wanted to leave the school for good. Suspiscion instantly falls on head teacher Graham Spaulding, but the team have trouble pinning anything on him. Jack is forced to break the rules in a desperate attempt to save Andy's life.

When the team investigates the disappearance of a man, they find pictures of child pornography in his home office and on his computer - all of the same little girl. However, the man who initially appears to be a pedophile on the run quickly becomes a helpful aid with the good intent of finding this little girl who has been subjected to a life of human trafficking and child prostitution.

A man who had been fervently trying to prove his son innocent of a convenience store shooting goes missing just before the scheduled execution for this crime.

Sam volunteers to go undercover to bust a ruthless drug smuggling ring, which the team believes is directly connected to the disappearances and murders of different women. Sam's difficult past is revealed, and despite warnings to get out, she becomes dangerously involved in her undercover investigation, which quickly turns into a life-or-death hostage situation.

A pregnant woman goes missing suddenly from a hospital. Her marriage seems perfect but the team soon find themselves involved with an underground railroad for battered women.

An agoraphobic journalist goes missing.

A boy says that his father has abducted a young child, but the investigation reveals that he may have been abducted too and that the man is not his father.

Jack finds himself at the center of an investigation into how missing persons cases have been handled, including such controversial cases as that of Graham Spaulding, the accused pedophile now on trial whose confession Jack may have coerced. As each squad member is interrogated by a representative from the Office of Professional Responsibility, a level of paranoia and distrust is established among them, leaving all of their professional futures in question.

A marine biology student is reported missing. The team first suspects the woman's boyfriend, but when new evidence of dead women in different cities points to the boyfriend's identical twin brother, the team struggles to discern which twin is really guilty.

A young, single mother who is struggling to make ends meet goes missing after dropping her son off at the babysitter. While the team struggles to find out what they can about the young woman's personal life, Sam feels the case is hitting very close to home. They soon learn of a drug smuggling gang and an ex-con who is connected to other unusually similar cases of missing women. The team plans to bust him on every charge possible, but at a very dangerous price.

Two teenagers go missing at the same time - a black boy and a white girl. The team is faced with the difficult task of finding both teens, which is made incredibly difficult by all the media coverage given to the white teen.

What appears to be the disappearance of a college student becomes more complicated when the team discovers that the victim is an impostor with multiple identities.

The team discovers that a missing trial consultant who helps profile prospective jurors was killed because he was investigating jury tampering in a mob trial.

Mentally unstable teen Clare Metcalf goes missing from the institution where her father Lawrence , with whom she lived since her mother's death, had to place his daughter with suicidal tendencies. The team finds the institution desperately covers up as another scandal could see it closed.

As Vivian undergoes open-heart surgery, Jack and the team search for a missing woman who may be the innocent victim of an identity theft ring. But further investigation reveals that she is linked to international terrorists plotting the assassination of a foreign dignitary.

Dr. Anwar Samir, a third year resident at a New York hospital suddenly goes missing following a disagreement with his superior and the rejection of a proposal by his girlfriend. Given his Saudi Arabian background, almost inevitably suspicions arise of terrorist links. Witnesses and colleagues begin to question past "suspicious" behaviour, and disagreement manifests within the team itself as to the presumption of guilt as the Joint Terrorism Task Force also becomes increasingly involved.