On May 30, 2008; a 2 part web-comic made by "Zeros 2 Heroes" was posted online which contains a story on what happen after the events of "Crouching Binome, Hidden Virus". However the comic was not canon to the original series and eventually discarded by fans and even Rainmaker.
Matrix! It's about time you got here. Call off your mangey mutt.
Matrix: Frisket, Heel!
Rob Cursor: Powerlock. What happened here?
Powerlock: I caught these two trying to crash the system.
Matrix: Hmm? Frisket, sniff!
Matrix: Frisket always had a thing for viruses.
Powerlock: Stop. One more move and the system ...
In the episode "Painted Windows," when entering Lost Angles, Glitch, who had been "melted" early in the episode, kept appearing on Bob's arm. On the Bob "stand ups," you can see when Glitch had been put there on accident.
ReBoot: Icons (1997) has a new intro sequence when Enzo Matrix grows up and becomes the Mad Max like renegade Matrix.
Several episodes were changed for their original U.S. airings. In "The TIFF", when Dot punches Bob, there is normally a loud smack noise. ABC replaced this with Bob saying "ouch!" "Web World War" was changed significantly, with many small parts cut out, including the destruction of Dot's Diner. When Cartoon Network aired "Mousetrap" in April '99, they cut out the entire party sequence due to the implied alcoholic intake, though a similar scene in "End Prog" was left intact.