The Pixar logo at the start develops rain, which leads into the opening.
The Pixar logo at the end replaces Luxo Jr with Duke Caboom (continuously doing stunts on his bike), and when he's done stomping on the I in the logo, Combat Carl runs in and finally gets a high-five.
Scenes over first part of credits further the story of Woody and Bo's new carnival gang, followed by a scene showing what Bonnie made after her first day of first grade. (First grade Bonnie does not appear, however.)
Woody's theme plays over the opening Disney logo.
In the 3-D version, the credits for the Stereoscopic 3-D team begin to pop out as they scroll by while all other credits are left static.